PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098455.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HB-other
Protein Properties Length: 375aa    MW: 41263.6 Da    PI: 7.5335
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098455.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.32.3e-071374655
                    S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    +ft++++ e+e+  ++  n  p +e   +LA+k            ++ +qV +WFqNrR+  
  XP_010098455.1 13 RFTASEVAEMEAILQEhnNTMPAREILVDLADKFsesverkgkiMVQMKQVWNWFQNRRYAI 74
                    699999********9665889999999***************999**************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-10476IPR009057Homeodomain-like
SMARTSM003890.001781IPR001356Homeobox domain
PROSITE profilePS500719.9121377IPR001356Homeobox domain
CDDcd000864.35E-51375No hitNo description
Gene3DG3DSA:1.10.10.601.5E-71377IPR009057Homeodomain-like
PfamPF000466.6E-51374IPR001356Homeobox domain
PfamPF167193.6E-40125251IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGRPPGNGGP AFRFTASEVA EMEAILQEHN NTMPAREILV DLADKFSESV ERKGKIMVQM  60
KQVWNWFQNR RYAIRAKLSR NLGMLSVSSM PRDDPTPVRN VPQAITAPIP APSGTGRGAS  120
ENSIMEFEAK SGRDGAWYDV ANFFSHRYLE SGDPEVLVRF VGFGPEDDEW VNIRKHVRQR  180
SLPCESSECV AVLPGDLILC FQEGKEQALY FDAHVLDAQR RRHDVRGCRC RFLVRYDHDQ  240
SEEIVPLRKV CRRPETDYRL QQLYAVNEAA SAEQQKSSTD NFGGGGFRAR ISAETTPKLQ  300
HADAALVAPA LHATAALATK ASILEPKKVE IVNVVVDAGN SNNVTASGNG IMSGSPASNK  360
PIVSGEKMPE GKAVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuv_A4e-451252554134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-451252554134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-451252554134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-451252554134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-451252554134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_A4e-451252554134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-451252554134SHH1 SAWADEE
4iur_B4e-451252554134SHH1 SAWADEE
4iuq_A4e-451252554134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-451252554134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098455.10.0hypothetical protein L484_012170
SwissprotQ8RWJ71e-146SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLW9RI100.0W9RI10_9R
STRINGGLYMA06G35561.11e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-132sequence-specific DNA binding transcription factors;sequence-specific DNA binding